Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_032118.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq1694 96.9 6e-17 >seq1694 Length=789422 Score = 96.9 bits (106), Expect = 6e-17 Identities = 173/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 2299 CTAGCAGATCGTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCC 2358 |||||||||| ||||||||| || ||| | || ||| | |||||| || ||||| Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2359 ATGTAGGATTTAACATCGGAGCTAGACTTAGCTCCCTGGATGTTAGGATGGAATTGGGTT 2418 ||||| |||||||||| ||| || || | ||| | | ||||||||||| | Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2419 GAGCGATTA-GGTGAGTTGAGGTCGAAGAAACGGTTG-TTTCTGCACTTGAATTTTCCTT 2476 | | ||| |||| | | | ||||| |||| ||| | | || |||||||||| Sbjct 599137 GTTCTGTTAGGGTGTGGT-ATGTCGA--AAACCTTTGATAGGTTCAACAGAATTTTCCTG 599081 Query 2477 CGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCATGTAATTCTCTGCAAATTC 2536 ||||| || || ||||||| ||| |||||||| || | |||||||| ||| | || Sbjct 599080 TGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTC 599021 Query 2537 TGATGAAT 2544 | |||||| Sbjct 599020 TTATGAAT 599013 Score = 78.8 bits (86), Expect = 2e-11 Identities = 114/158 (72%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 1714 TTTTCCTCGTCAA---GGAACTCTTTATAGGACG-ACGTTGGGCCCGGATTGCACAGGAA 1769 |||||||| ||| |||| ||||||||||||| || || || ||||| |||| | Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCA-CCTGGATTACACAATAC 599775 Query 1770 GATTGTTGGGATCCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCA 1829 ||||| || ||| | | ||||||||||| ||||||| ||||| | |||||||| Sbjct 599774 GATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCA 599715 Query 1830 GTCTCGTTGGGCCCCCATGAATTCCTTGAAATGTTTCA 1867 ||| ||| |||| || ||||| || | || |||| Sbjct 599714 ATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCA 599677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8818870299720