Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_033334.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 201/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 2077 GAAGAATACAC-AGAAGGAGGAGGAGAGAAAATCCTATCTAAATTCGAACATAAATTATG 2135 ||| |||| || |||| || ||| | ||| || | | | ||||| ||| |||||||| Sbjct 1748786 GAACAATATACTAGAATTAG-AGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATG 1748844 Query 2136 ATATTGAAAAATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAAGGCAGCTTCT-T 2194 |||||| | ||| || | | ||| |||||| | ||||||||||| || || ||| | Sbjct 1748845 ATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCT 1748904 Query 2195 TGCTGCCGGAATTAAGTGCCTCTGCTGCTGCGTCATTAGCCGTTTGCTGGCCTCCTCTAG 2254 || || | |||||| || || || | | || | | ||| || | ||| ||| Sbjct 1748905 TGGTG-CATAATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAA 1748963 Query 2255 CAGATCTTCCGTCGATTTGAAATTCGCCCCAAGTGAGGGTATCTCCATCCTTATCGACGT 2314 |||||||||| || |||||||| || ||||| | ||||| ||||| || | || Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2315 AGGACTTGA--CATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATG 2366 | || || | |||| || | |||||||| || | ||||||||||| || Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTG 1749077 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 180/270 (67%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 2097 AGGAGAGAAAATCCTATCTAAATTCGAACATAAATTATGATATTGAAAAATAAATTTTTC 2156 ||| ||||| || | | ||| | ||| | ||||||||||| | | ||| |||| Sbjct 599410 AGGGGAGAATATTCCACTCAAACTGGAATTGACATTATGATATTATAGATGAAACTTTTT 599351 Query 2157 AGGGAGTTTCTCCCTGATTATTTGTAAGGCAGCTTCTTTGCTGCCGGAATTAAGTGCCTC 2216 ||| |||||| | ||||||||||| | || ||| || | ||||||| | || Sbjct 599350 -GGGTCTTTCTCTTTTATTATTTGTAATGTTGCATCTCTGGACCTAGAATTAATCACTTC 599292 Query 2217 TGCTGCTGCGTCATTAGCCGTTTGCTGGCCTCCTCTAGCAGATCTTCCGTCGATTTGAAA 2276 | | | | | | ||||||| | || |||||||||||||| ||||||||||| Sbjct 599291 AGTGTATACACCTGCAACTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAA 599232 Query 2277 TTCGCCCCAAGTGAGGGTATCTCCATCCTTATCGACGTAGGACTTGACATCGGAGCTGGA 2336 || |||||| | | ||||| ||||| || | ||| || || |||| ||| || Sbjct 599231 ATCACCCCAATCTACGTAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGA 599172 Query 2337 TTTAGCTCCCTGTATGTTTGGATGGAAATG 2366 ||| | ||| | |||||||||| || Sbjct 599171 TTTTGTAGACTGAACACTTGGATGGAATTG 599142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8786871496020