Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_033554.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 259/381 (68%), Gaps = 14/381 (4%) Strand=Plus/Plus Query 2215 TCCTCTTGCAGATCGTCCGTCGATCTGAAACTCCCCCCATTCGAGAGTGTCTCCGTCCTT 2274 ||| || ||||||| ||| || || ||||| || | || || | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2275 GTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATG 2334 |||||||| || || || | ||| | ||||||| || | ||| ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2335 TGCTGACCTATTTGGG-GATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCC 2393 | || || ||| |||| | ||| || |||| ||||| ||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2394 CCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGGAGTTCTCGGCAGA 2453 | ||| ||||| || || |||| ||| |||||||| || || |||||| ||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2454 TTTTAATATATTTTTGGGAAGTTG--GGGT--TTGAAGATTCTGGATTTGGGAAAGTGCT 2509 | | || ||||| | | ||| |||| |||| | || || | || ||| || Sbjct 1743380 CTCTTATGAATTTTAG---ATTTGTAGGGTAGTTGAGGCTTTTG-AGATGATGAAGAGCA 1743435 Query 2510 TCTTCTTTAGTGAGAGAACA-CTTGGGATAAGTGAGGAAATAGTTTTTAGAATAAATAAC 2568 || ||||| ||||| ||||| ||||||| |||||||||||| ||||| || || Sbjct 1743436 TCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCT 1743494 Query 2569 AAACCGCTTTGGAGCCATGTT 2589 |||| ||| |||||||| || Sbjct 1743495 AAAC--CTTGGGAGCCATTTT 1743513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652485762752