Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_033779.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq519 109 1e-20 seq3069 80.6 5e-12 >seq519 Length=3254320 Score = 109 bits (120), Expect = 1e-20 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 2239 CCCCTTGCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGTGTATCGCCGTCCTTG 2298 ||||| |||||| ||| || || || || || |||| || | || || ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2299 TCGATGTAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2356 || ||||| || || || || || | |||||||| |||| || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2357 GTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTCTGATTTTGGCAGTTGAATTTTC 2416 | | || || ||| | | |||||| || | ||||| |||| |||||| | Sbjct 1749077 GAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2417 CTTCGAACTGCAGAAGCACATGTAAATGAGGTTCGCCATCTTCGTGCAACTCTCTGCAGA 2476 || ||||| ||| ||||| ||||| ||||| | | | ||| | |||||||| | Sbjct 1749136 CTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACA 1749193 Query 2477 TTTTAATGTATTTTTTATTTGTTGGGGTTTGGAGTTTAAGTAGTTGTTCGAGGGCTTCGT 2536 ||| ||| |||| |||||| ||| | ||| || || || || | || | Sbjct 1749194 CTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCAT 1749253 Query 2537 CTTTGGTTAGAGAACATTTTGGGAAAGTAAGGAAATAATTTTTGGAATTAACTCTAAA-A 2595 |||| || || ||||| |||||||||| || |||||||||||| ||| | |||||| | Sbjct 1749254 CTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACA 1749313 Query 2596 CGCTTTGGAGGAGCCATTTGGTCAACTAGCACCGATTGA 2634 | | | | |||||||||| |||| | ||||||||| Sbjct 1749314 TGTTATTG-GGAGCCATTT-TTCAAATGTTACCGATTGA 1749350 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 139/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1305 TCCTGAGGTTGTGATTGAACCGTATCTGTAATGTGATGATGTCCTGGTTCATGTTGAATG 1364 ||||||||||| ||||| ||||||| | |||||||| |||| |||| |||| Sbjct 3754409 TCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATG 3754468 Query 1365 GCCTGATGTCGTGTCTTGTTATCGTGAAATATAGGGGATTGTTTATCTCCGAGATAAACA 1424 | || | | ||||| ||||| | |||||||||||||||| || || | ||| | | Sbjct 3754469 GTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATA 3754528 Query 1425 CGCCATTCTTTGCTTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGATG 1484 || |||| || | | | ||||| || ||| ||||| ||| ||| ||| || Sbjct 3754529 CGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTG 3754588 Query 1485 CAGTCGATGTGGAGGTAGTATG 1506 || | |||| ||||||||| Sbjct 3754589 CAATTAATGTCTTGGTAGTATG 3754610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796471137130