Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_001932.1 Length=2815 Score E Sequences producing significant alignments: (Bits) Value seq29604 80.6 5e-12 >seq29604 Length=41804 Score = 80.6 bits (88), Expect = 5e-12 Identities = 223/334 (67%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 2453 ATCGTCCATCGATCTGAAATGTTCCCCATCTCCAAGTA-TCACCGTCCTTGTCGATGTAG 2511 ||| ||||||| | ||||| ||| | ||| | ||| || || || || || ||||| Sbjct 21331 ATCTTCCATCGTTTTGAAAATCACCCTA-CTCTACGTAATCTCCCTCATTTTCAATGTAT 21273 Query 2512 GACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTG 2571 || || || ||| || | |||||| | ||||| ||| ||||||| | || || Sbjct 21272 GATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTA 21213 Query 2572 GT-TGGTGATACCAGGTCGAAGAATCGCTGATTCTGGCATTTGTATTTGCCTTCGAACTG 2630 | ||||| | | | |||| || | ||||| ||| |||| || |||||| Sbjct 21212 TTATGGTGTTTT-ATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTG 21154 Query 2631 GATGAGCACGTGCAGATGAGGCTCCCCATTCTCATGTAGCTCCCTGCATATTTTGATGAA 2690 || || | ||||| ||| || ||||| || | ||||| || ||||| | | | ||| | Sbjct 21153 GAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTA 21094 Query 2691 TTTAGGGTTTGTA-GGTGTTTGAAAGTTCCTAATTTGAGAGAGAGCCTCTTCTTTAGTTA 2749 ||| | |||||| ||| |||| | || | | ||| ||| | | ||||| | | Sbjct 21093 TTTGAGATTTGTACGGTAGTTGAGAATTA-TGAGATGATGAAGAACATAATCTTTTGAGA 21035 Query 2750 AGGAGCATCGAGGGTAAGTGAGGAAATAGTTTTT 2783 || |||| ||| ||||||||||||| ||||| Sbjct 21034 GAGAACATCTTGGGAAAGTGAGGAAATAATTTTT 21001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8888468980000