Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003434.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq29604 113 8e-22 >seq29604 Length=41804 Score = 113 bits (124), Expect = 8e-22 Identities = 321/491 (65%), Gaps = 2/491 (0%) Strand=Plus/Minus Query 2092 AAATTAGAATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTCTCCTTTATT 2151 ||||| ||| ||||| |||||||| | ||| || ||| |||| |||||| |||||| Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2152 ATAGCCATTGCAGCTTCTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCATCATTAGCT 2211 || | | || | | |||| | | ||| | ||||| | ||||| | || Sbjct 21413 ATTTGTAATAATGCATTTCTAGACCTAGAATTAATCGCTTCGGTGTATGCATCTACAACT 21354 Query 2212 GTCTGTTGACCTCCTCGTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGGGTG 2271 ||||| | | ||| ||| |||| |||||| | || || || ||| | || | | Sbjct 21353 GTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAA 21294 Query 2272 TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGTGCTGGATTTAGCTCCCTGAATGTTC 2331 ||||| || || || ||||| || || || ||| | | |||||| | ||||| || Sbjct 21293 TCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTT 21234 Query 2332 GGATGGAAATGTGCTGACCTGTTTGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGCAC 2391 ||||||| | || || || || | | |||| || | |||||| |||| Sbjct 21233 AGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAA 21174 Query 2392 TGATATTTCCCTTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAGT 2451 ||||||| |||||||| || | || | ||| || ||| | | ||||||| Sbjct 21173 CATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGT 21114 Query 2452 TCTCTGCAGATCTTGATGTATTTTTTGTTTGTTGGGGGTTGGAGATTTAATAATTGGGAA 2511 |||||||| | | |||||||| ||||| || | |||| ||| | || | Sbjct 21113 TCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGA 21054 Query 2512 AGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATT 2570 || | | ||||| | || || || ||||||| ||||||| |||||||||||| ||| Sbjct 21053 AGAACATAATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATT 20995 Query 2571 TATTTTTAACC 2581 |||| | |||| Sbjct 20994 TATTCTAAACC 20984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671263100800