Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003825.1 Length=2861 Score E Sequences producing significant alignments: (Bits) Value seq29604 77.0 6e-11 >seq29604 Length=41804 Score = 77.0 bits (84), Expect = 6e-11 Identities = 235/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 2369 CTGTCTGCTGGCCTCCTCTAGCAGATCTAGCGTCAATCTGGAATTCTCCCCATTCGATAG 2428 ||||||||| ||| ||||| |||| | || | || || || ||| | || | Sbjct 21355 CTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGT 21296 Query 2429 TGTCTCCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGT 2488 ||||| || || || | ||| || || || ||| || | |||||| | ||| | | Sbjct 21295 AATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACAT 21236 Query 2489 TCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTTTGC 2548 | ||||||| | ||| || | || | | | |||| || | |||||| ||| Sbjct 21235 TTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGC 21176 Query 2549 AGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTTTCGTGTA 2608 | |||||||| ||| || | ||| | || | ||| |||||||| || | ||||| Sbjct 21175 AACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTA 21116 Query 2609 GCTCTCTAGCTACTTTTATGTATTTTTTATTTGTT-GGTGTTTGTAGCCTTTGAAGTTGG 2667 | ||||| ||| | |||||||| |||||| ||| ||| || || || || Sbjct 21115 GTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTAGTTG-AGAATTATGAGATGA 21057 Query 2668 TCGAGAGCTTCTTCTTTGGATAAAGAACAA-TTGGGATATGTGAGGAAATAGTTCTTG 2724 | ||| | | ||||| || | |||||| |||||| | ||||||||||| || ||| Sbjct 21056 TGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGAAA-GTGAGGAAATAATTTTTG 21000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9035544366000