Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_003828.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq29604 86.0 1e-13 >seq29604 Length=41804 Score = 86.0 bits (94), Expect = 1e-13 Identities = 239/360 (66%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 2230 CTGTCTGTTGTCCTCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAA 2289 ||||||| | |||| ||||| ||| ||| ||| | || ||| |||| | || | Sbjct 21355 CTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGT 21296 Query 2290 CATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGT 2349 |||||| || || || || || || || || ||| || | |||||| | ||||| | Sbjct 21295 AATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACAT 21236 Query 2350 TCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTAC 2409 | ||||||| | || || | || | | | |||| || | ||||||||| | Sbjct 21235 TTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGC 21176 Query 2410 AATTGTATTTTCCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTA 2469 || |||| || ||| |||| || || || | ||| |||||||| || | |||| Sbjct 21175 AACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTA 21116 Query 2470 GTTCTCTGCAAATTTTGATGAATAATTTG---TTTGT-GGGTGTTTGTAGGTTTGTTATT 2525 |||||||||| | | | ||| ||||| ||||| ||| ||| || || | | Sbjct 21115 GTTCTCTGCACACTCTCATG---TATTTGAGATTTGTACGGTAGTTG-AGAATTATGAGA 21060 Query 2526 TGGGAAAGTGCATTTTCTTTTGTTAAATCACAT-TTGGGATATGTAAGGAAATAATTTTT 2584 || ||| ||| ||||||| | | |||| |||||| | || |||||||||||||| Sbjct 21059 TGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTT 21001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8754182758000