Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq29604 87.8 3e-14 >seq29604 Length=41804 Score = 87.8 bits (96), Expect = 3e-14 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 2105 AAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATT 2164 ||||| | | ||||| |||||||| | ||| ||| ||||||| ||| || ||||| Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2165 ATTGCTAATGCCGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCA-GCATCATTAGC 2223 ||| |||| || | || | | ||| | || || | || | ||||| | | Sbjct 21413 ATTTGTAATAATGCATTTCTAGACCTAGAATTAATCGCTTCGG-TGTATGCATCTACAAC 21355 Query 2224 TGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAAGCGACCCCAGTCGATGTA 2283 |||||| | | ||| |||| ||||||||||| | ||||| |||| | || | ||| Sbjct 21354 TGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTA 21295 Query 2284 ATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAATT 2343 ||| || || || || ||||| || || |||||| || | || ||| | ||| | ||| Sbjct 21294 ATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATT 21235 Query 2344 TGGGTGGAATTGGGTGGCGTTATTAGGGTG 2373 | | ||||||| | | | ||||| |||| Sbjct 21234 TAGATGGAATTTGATTGTTCTATTATGGTG 21205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8693644679600