Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq29604 96.9 6e-17 >seq29604 Length=41804 Score = 96.9 bits (106), Expect = 6e-17 Identities = 207/307 (67%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 2073 AACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATA 2132 |||||| || | ||| ||||| || || | | | ||||| | | ||||| |||||| Sbjct 21510 AACATATACTTGTATTTGAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATA 21451 Query 2133 TTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCTTCGGTTGA 2192 || | ||| ||| ||| ||| ||| || | |||||| ||| ||| | | || Sbjct 21450 TTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTTCTAGA 21391 Query 2193 ACCTGCATTTAAGGCCTCTGCTGCA-GCATCATTAGCTGTCTGTTGACCTCCTCGTGCAG 2251 | | ||| | || || | || | ||||| | ||||||| | | ||| ||| Sbjct 21390 CCTAGAATTAATCGCTTCGG-TGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAA 21332 Query 2252 ATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGG 2311 ||||||||||| | ||||| |||||| | || | |||||| | || || || ||||| | Sbjct 21331 ATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATG 21272 Query 2312 ACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAGCTAT 2371 | || |||||| || | || ||| | ||| | ||| ||||||||| | | | |||| Sbjct 21271 ATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTAT 21212 Query 2372 TAGGGTG 2378 || |||| Sbjct 21211 TATGGTG 21205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8706434153200