Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 231/346 (67%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 2252 GCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACA 2311 ||| ||| ||| ||| | ||||| |||||| | || ||| ||||| || || || | Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2312 TAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCC 2371 || || || ||||| | | |||||| | ||||| ||| ||||||| | || Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2372 CTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAAT 2431 || | || | | | |||| || | ||||| ||| |||||||| || Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2432 TGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATG 2491 |||| ||| | || | |||||||||||| || | ||| ||||||||||| ||| | ||| Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2492 TATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGTT 2551 ||||| |||||| || | || || | | || ||| | | ||||| | Sbjct 21095 TATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAG 21036 Query 2552 AAGGAGCA-CTTAGGATATGTGAGGAAATAATTTTTGCAATTTATT 2596 | || || ||| ||| | ||||||||||||||||||| ||||||| Sbjct 21035 AGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATT 20991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8782958377000