Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_004640.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq29604 105 1e-19 >seq29604 Length=41804 Score = 105 bits (116), Expect = 1e-19 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 2131 TAAATTATGATATTGAAAAATAAAATCTCTAGGGAGTTTCTCCCTAATTATTTGTAATGC 2190 ||||| |||||||| | ||| ||| | | ||| |||||| | |||||||||||| Sbjct 21462 TAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAA 21403 Query 2191 TGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTGACC 2250 ||| | ||| | | || | || || | |||||| | ||||||||| | Sbjct 21402 TGCATTTCTAGACCTAGAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATA 21343 Query 2251 TCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCTTT 2310 ||| ||||| ||||||| ||| ||||||| |||| | || | |||||| || || || Sbjct 21342 TCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATT 21283 Query 2311 CTCGATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATTG 2370 || ||||| || || ||||| | | ||||||| | ||| | |||| ||||||||| Sbjct 21282 TTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTT 21223 Query 2371 GTTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2401 | | | || || |||||| | | ||||| Sbjct 21222 GATTGTTCTATTATGGTGTTTTATGCCGAAA 21192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8754182758000