Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07]
77,400 sequences; 512,990,763 total letters
Query= NC_005031.1
Length=2752
Score E
Sequences producing significant alignments: (Bits) Value
seq29604 95.1 2e-16
>seq29604
Length=41804
Score = 95.1 bits (104), Expect = 2e-16
Identities = 238/362 (66%), Gaps = 0/362 (0%)
Strand=Plus/Minus
Query 2239 AGCACTTCTTCCGTCGACCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGAT 2298
|||| |||||| ||| || || || ||| | || | ||||| || || || ||
Sbjct 21336 AGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAAT 21277
Query 2299 ATAAGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2358
|| || || || ||| || |||||||| | ||||| || ||||||| | ||
Sbjct 21276 GTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGT 21217
Query 2359 CCTGGTAGGGGATGTAAGGTCGAAGAATCTGTTATTTTGGCACTTGAATTTCCCTTCGAA 2418
|| || || | | | | |||| || || | ||| ||| |||||||| |||
Sbjct 21216 TCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAA 21157
Query 2419 CTGGATAAGCACGTGCAGATGAGGGCTCCCATCTTCATGGAGTTCTCTGCAGATTTTGAT 2478
||||| ||| | ||||| ||| || ||| | | || ||||||||||| | | | ||
Sbjct 21156 CTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCAT 21097
Query 2479 GAATTTTTTATTTGTTGGGGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGT 2538
| |||| |||||| || ||| || || | || ||| | | ||||| |
Sbjct 21096 GTATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGA 21037
Query 2539 GAGAGAGCACTGTGGGTATGTGAGGAAATAATTTTTGGCATTTATTAAAAAACGTTTGGG 2598
|||||| || |||| | |||||||||||||||||| ||||||| ||| | ||| |
Sbjct 21036 GAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAACCTGTTGAG 20977
Query 2599 AG 2600
||
Sbjct 20976 AG 20975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8690447311200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |