Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005032.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 268/400 (67%), Gaps = 14/400 (4%) Strand=Plus/Minus Query 2205 TTAATTGCTTTGGCGTAAGCATC----ATTGGCTGATTGTTGACCCCCTCTAGCAGATCT 2260 ||||| |||| || ||| ||||| | || ||| || | |||| ||||| |||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATAT---CCCT-TAGCAAATCT 21328 Query 2261 TCCATCGATCTGAAACTCACCCCATTCGAGGGTGTCTCCGTCCTTATCAATATATGATTT 2320 ||||||| | ||||| |||||| | || | | ||||| || || ||||| |||||||| Sbjct 21327 TCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTT 21268 Query 2321 GACGTCGGAGCTTGATTTAGCTCCCTGTATGTTTGGATGGTAATGTG-CTGACCTTGTTG 2379 || ||| || |||||||| | ||| | ||| ||||| ||| || || || | Sbjct 21267 AACATCGAAGGTTGATTTAACATACTGAACATTTAGATGG-AATTTGATTGTTCTATTAT 21209 Query 2380 GGGATACCAGATCGAAGAATCTCTTATTCGTGCATCTGTATTTCCCTTCGAACTGGATGA 2439 || | | |||| || || | ||| ||||| | ||||||| |||||||| | Sbjct 21208 GGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAA 21149 Query 2440 GCACATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATTTTGATGAATTTTT 2499 | | || | ||| || ||| | | ||| ||||||||||| | | | ||| |||| Sbjct 21148 GTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGA 21089 Query 2500 TGTTTGTTACAGTA-TCTAGCGTCTTTATCTGGGCAAGGGTTTCCTCTTTTGTAAGACAG 2558 |||| ||| ||| | || | | | || ||| | ||||||| ||| | Sbjct 21088 GATTTG-TACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAA 21030 Query 2559 CAT-TTGGGATATGTAAGAAAATAATTTTTGGCATTTATT 2597 ||| |||||| | || || |||||||||||| ||||||| Sbjct 21029 CATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATT 20991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700039416400