Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005347.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq29604 131 3e-27 >seq29604 Length=41804 Score = 131 bits (144), Expect = 3e-27 Identities = 273/400 (68%), Gaps = 9/400 (2%) Strand=Plus/Minus Query 2238 TCCCCTAGCACTTCTGCCGTCGACCTGGAATACCCCCCATTCAAGGGTGTCTCCGTCCTT 2297 |||| ||||| ||| || ||| || || | ||| | || | | ||||| || || Sbjct 21342 TCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATT 21283 Query 2298 GTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2357 || ||||| || || || ||| || |||||||| | ||||| || ||||||| | Sbjct 21282 TTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTT 21223 Query 2358 TGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCC 2417 ||| || | || | | | |||| || || | ||| ||||| ||||||| Sbjct 21222 GATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCC 21163 Query 2418 CTCGAACTGCATAAGCACGTGGAGATGAGGTTCCCCATTTGTGTGCAACTCTCTGCAGAC 2477 |||||| | ||| | ||| | ||| |||||||| || |||| | |||||||| || Sbjct 21162 GGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACAC 21103 Query 2478 TTTGATGAATTTTTTATTTGTTGGG--GTTGACAGATTTAGAAGTTGCTCTAACGCTTCT 2535 | | ||| |||| |||||| || ||||| || ||| || || | | | | Sbjct 21102 TCTCATGTATTTGAGATTTGTACGGTAGTTGA--GAATTATGAGATGATGAAGAACATAA 21045 Query 2536 TCTTTAGTGAGGGAGCATTTTGGGAAAGTGAGGAAATAATTTTTGGAATTTATTTTAAAA 2595 ||||| | ||| || ||| |||||||||||||||||||||||||| ||||||| |||| Sbjct 21044 TCTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA- 20986 Query 2596 CGCTTTGGAGGAGCCATTTGGTC-AATGTACCCCAATTGA 2634 || | || |||| || ||| ||||| | |||||||| Sbjct 20985 -CCTGTTGA-GAGCTCTTATGTCAAATGT-CACCAATTGA 20949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8795747541000