Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07]
77,400 sequences; 512,990,763 total letters
Query= NC_005843.1
Length=2606
Score E
Sequences producing significant alignments: (Bits) Value
seq29604 86.0 1e-13
>seq29604
Length=41804
Score = 86.0 bits (94), Expect = 1e-13
Identities = 239/363 (66%), Gaps = 9/363 (2%)
Strand=Plus/Minus
Query 2077 CTGTTTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAATG 2136
|||| |||| | ||| ||||| ||||||| ||| | || || || ||| | || |
Sbjct 21355 CTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGT 21296
Query 2137 TATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGT 2196
|||||| || || || ||||| || || || ||| || |||||||| | ||||| |
Sbjct 21295 AATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACAT 21236
Query 2197 TCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAACTGTCTTTGATTCGTGA 2256
| ||||||| | || || | || | | | |||| |||||||| |||
Sbjct 21235 TTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGC 21176
Query 2257 TTTGGATTTTCCCTTCGAACTGCATAAGCACGTGGAGATGATGTTCCCCATTTTCGTGCA 2316
| |||||| |||||| | ||| | ||| | ||| ||||||| || | ||| |
Sbjct 21175 AACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTA 21116
Query 2317 GTTCTCTGCAGATCTTGATGTATTT----TTTGTTAGAAGGAAGTTGTATGGACAGTAGT 2372
|||||||||| | | |||||||| ||||| | || ||||| | | ||
Sbjct 21115 GTTCTCTGCACACTCTCATGTATTTGAGATTTGT---ACGGTAGTTG-AGAATTATGAGA 21060
Query 2373 TGATCTAGGGCTTCTTCTTTTGTAAGAGGACATTGGGGGTATGTTAGGAAGATATTTTTT 2432
|||| || | | ||||||| |||| |||| ||| | || ||||| ||| |||||
Sbjct 21059 TGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAA-ATAATTTTT 21001
Query 2433 GCT 2435
|||
Sbjct 21000 GCT 20998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8223631524800
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |