Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_005855.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq29604 105 1e-19 >seq29604 Length=41804 Score = 105 bits (116), Expect = 1e-19 Identities = 238/353 (67%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 2238 GCAGATCTTCCATCGATCTGAAACTCACCCCAATCGATGGTGTCTCCGTCTTTATCGATG 2297 ||| ||||||||||| | ||||| |||||| | || | | ||||| || || || ||| Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2298 TAGGACTTGACATCAGATGAGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGAT 2357 || || || ||||| | | |||||| | ||||| ||| ||||||| | ||| | Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2358 CTACTTGGGGATGCCAGGTCGAAGAATCTGTTATTCGTGCACTGGTACTTGCCTTCGAAC 2417 ||| | || | | | |||| || || | ||| ||||| | || || |||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2418 TGAACAAGGGCATGCAGATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAAATTTTAATG 2477 || | ||| |||| ||| |||||||| || | ||| || |||||||| | | | ||| Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2478 TA--TAATTTATTTACAGGAGTTTCGAGGGTTTGTAGTTGGGAAAGTGCTTCGGATAAAG 2535 || | | | | ||| | |||| ||| || || || ||| | | | | Sbjct 21095 TATTTGAGATTTGTACGGTAGTT--GAGAATTATGAGATGATGAAGAACATAATCTTTTG 21038 Query 2536 AAAGAGAACA-CTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAA 2587 | |||||||| || |||| |||| ||||||||||||||| ||||||| |||| Sbjct 21037 AGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8773366504000