Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_006631.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq29604 89.7 9e-15 >seq29604 Length=41804 Score = 89.7 bits (98), Expect = 9e-15 Identities = 330/509 (65%), Gaps = 16/509 (3%) Strand=Plus/Minus Query 2090 AAATTTGAATTTAAATTATGAAATTGAAGTAGAAAGTCTCTTGGGGCTTTCTCCTTCAAT 2149 ||||| ||| ||||| |||| ||| || | || | ||||| ||||||| || | | Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2150 ATATTGAGGGCCTGAGCTT-TGGACCCTGCGTTGATTGCCTCGGCATATGCGTCGTTGGC 2208 || ||| || || | |||| | || || || |||| ||||| || | Sbjct 21413 AT-TTGTAATAATGCATTTCTAGACCTAGAATTAATCGCTTCGGTGTATGCATCTACAAC 21355 Query 2209 AGTCTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAATTCCATGATCAAGGAT 2268 ||||| | ||| |||| ||||||||||| ||| ||| || | || | | Sbjct 21354 TGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTA 21295 Query 2269 GTCTCCGTCTTTCTCCACGTAGGTTTTGACATCGC---TTGAGCTTTTAGCTCCCTGAAT 2325 ||||| || || || | ||| | ||| |||||| |||| |||| | ||||| Sbjct 21294 ATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGA---TTTAACATACTGAAC 21238 Query 2326 GTTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGTCGAAGAATCT---ATTGTT 2382 ||| ||||||| | || || | || | | | | |||| || || |||| | Sbjct 21237 ATTTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGT 21178 Query 2383 TCTACACTGGAATTTCCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATTTTT 2442 | ||| |||||||| |||||||| || | |||| || || | ||| || || Sbjct 21177 GCAACAT---AATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATT 21121 Query 2443 ATGAAGCTCTCTGCAGATTCTAATGAATTTTATGGAAGTTGGGGTTTGGAGATTTAATAA 2502 || || |||||||| | ||| ||| |||| | || || | |||| ||| | Sbjct 21120 GTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTAGTTGAGAATTATGAG 21061 Query 2503 TTGGGAAAGTGCCTCTTCTTTTGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAATTTT 2561 || ||| | | ||||||| ||| || || ||||||| |||||||||||||||||| Sbjct 21060 ATGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTT 21002 Query 2562 TGGCATTTATTTTAAACCGATTGGGGGCT 2590 || ||||||| |||||| ||| | ||| Sbjct 21001 TGCTATTTATTCTAAACCTGTTGAGAGCT 20973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674460469200