Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_007290.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq29604 93.3 7e-16 >seq29604 Length=41804 Score = 93.3 bits (102), Expect = 7e-16 Identities = 258/393 (66%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 2186 TTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGTCTGTTGTCCTCCTCTTGCTGATCTTCCA 2245 |||| |||| ||| ||| || || ||||||| | ||| | || |||||||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCA 21324 Query 2246 TCGATCTGAAACTCTCCCCACTCGAGAGTGTCTCCGTCCTTGTCGATGTAGTCCTTGACA 2305 ||| | ||||| || ||| |||| | ||||| || || || ||||| || ||| Sbjct 21323 TCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACA 21264 Query 2306 TCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAT 2365 || || |||||||| | ||||| || ||||||| | || || | || | Sbjct 21263 TCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTGT 21204 Query 2366 ACCAGGTCGAAGAATCTCTGATTTTGGCACTTGTACTTCCCTTCGAACTGGATGAGCACG 2425 | | |||| || || ||||| ||| | ||||| |||||||| || | | Sbjct 21203 TTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATG 21144 Query 2426 TGAATATGAGGTTCCCCATTTTCATGGAGCTCTCTGCAGATCTTGATGAATTTTTTATTT 2485 || | ||| |||||||| || | || || |||||||| | | ||| |||| |||| Sbjct 21143 TGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTT 21084 Query 2486 GTA-GGAGTTTGTAGGTTTTGAAGTTGGGAAAGTGCTTCTTCTTTTGTAAGAGAGCAATT 2544 ||| || ||| || ||| | || ||| | | ||||||| ||||| || | Sbjct 21083 GTACGGTAGTTGAGAATTATGA-GATGATGAAGAACATAATCTTTTGAGAGAGAACATCT 21025 Query 2545 TGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2577 ||| |||||||||||||||||||| ||| || Sbjct 21024 TGGGAAAGTGAGGAAATAATTTTTGCTATTTAT 20992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687249942800