Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_007638.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq29604 102 1e-18 >seq29604 Length=41804 Score = 102 bits (112), Expect = 1e-18 Identities = 273/411 (66%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 2192 TTAAGTGCTGCGGCGTAAGCGTCGTTGGCTGTCTG-TTGTCCCCCTCTGGCAGATCTTCC 2250 |||| ||| ||| ||| || || ||||||| || | |||| | ||| ||||||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCT-TAGCAAATCTTCC 21325 Query 2251 GTCGATCTGAAACTCTCCCCATTCGATGGTGTCGCCGTCCTTGTCGATGTAGGACTTGAC 2310 ||| | ||||| || ||| | || | | || || || || || ||||| || || || Sbjct 21324 ATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAAC 21265 Query 2311 ATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGTTTGGGGA 2370 ||| || |||||||| | ||||| || ||||||| | || | || || Sbjct 21264 ATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTG 21205 Query 2371 GACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCAC 2430 | | |||| || | ||||| ||| ||||||| |||||||| || | Sbjct 21204 TTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTAT 21145 Query 2431 GTGAATATGAGGTTCCCCATTCTCGTGGAGTTCTCTGCAGACCTTAATGTATTTTTTGTT 2490 ||| | ||| |||||||| || | ||| ||||||||||| || | |||||||| || Sbjct 21144 GTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATT 21085 Query 2491 GGTTGGGGTGTTTAGGTTTTGGATTTGGGAAAGTGTTTCCTCTTTAGTAAGAGAGCAT-T 2549 || || ||| || || || || ||| | ||||| | ||||| ||| | Sbjct 21084 TGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCT 21025 Query 2550 TGGGATAAGTAAGGAAATAATTTTTGCAATAAATGTTAAAGC-GTTTAGAG 2599 ||||| |||| |||||||||||||||| || || |||| | ||| |||| Sbjct 21024 TGGGA-AAGTGAGGAAATAATTTTTGCTATTTATTCTAAACCTGTTGAGAG 20975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8706434153200