Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008316.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq29604 89.7 9e-15 >seq29604 Length=41804 Score = 89.7 bits (98), Expect = 9e-15 Identities = 232/351 (66%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 2222 GCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTTGATG 2281 ||| ||||||||||| | ||||| || ||| | || | | ||||| || || | ||| Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2282 TAGGACTTGACGTCGGAACTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGAC 2341 || || || || ||| | |||||||| | ||||| ||| ||||||| | ||| Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2342 CTGGTTGGGGATACCAAGTCGAAGAATCGCTGATTCTTGCACTGGTATTTTCCCTCGAAC 2401 || | || | | | |||| || | ||||| |||| |||| || |||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2402 TGGATAAGCACGTGGAGATGAGGGTTCCCATTTTGGTGTAGTTCTCGACAGAttttgatg 2461 |||| ||| | ||| | ||| || | ||| || | ||||||||||| || | | | ||| Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2462 tattttttgtttgttggtgta-tctagggcttttattttttcaagggtttcttctttgGC 2520 ||||| ||||| | ||| | || | | | | | ||| | ||||| | Sbjct 21095 TATTTGAGATTTGTACG-GTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGA 21037 Query 2521 GAGAGAGCAGTCTGGATAAGTAAGGAAATAATTTTTGGCATTTATCTTAAA 2571 |||||| || ||| |||| ||||||||||||||| |||||| |||| Sbjct 21036 GAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8734999012000