Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 238/358 (66%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 2262 TCCCCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGGGTGTCGCCGTCCTT 2321 |||| ||||| |||||| ||| || || || ||| | || | | || || || || Sbjct 21342 TCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATT 21283 Query 2322 GTCGATGTAGGACTTGACGTCCGAGCTAGACTTAGCTCCCTGAATGTTCGGATGGAAATG 2381 || ||||| || || || || || | || ||| | ||||| || ||||||| | Sbjct 21282 TTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTT 21223 Query 2382 TGTTGACCTACTTGGGGAGACCAGGTCGAAGAATCTCTGATTTGTGCAGTTGTATTTGCC 2441 ||| ||| | || | | |||| || || ||||| ||||| |||| || Sbjct 21222 GATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCC 21163 Query 2442 CTCGAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCATGTAACTCACGGCAGAT 2501 |||||||| ||| | || | |||||||||||| || | |||| || | ||| | Sbjct 21162 GGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACAC 21103 Query 2502 TTTAATATATTTTTTATTTGTAGGGGT-TTGTAAATCTTTGAGTTGCCCTAATGCGTCTT 2560 | | || ||||| ||||||| || ||| ||| | |||| || | | | | Sbjct 21102 TCTCATGTATTTGAGATTTGTACGGTAGTTGAGAAT-TATGAGATGATGAAGAACATAAT 21044 Query 2561 CTTTAGACAGAGAGCATTTTGGGAAAGTGAGAAAATAATTTTTGGCCTTAATGCTAAA 2618 |||| || ||||| ||| ||||||||||||| |||||||||||| || || ||||| Sbjct 21043 CTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8814931287000