Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009030.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq29604 96.9 6e-17 >seq29604 Length=41804 Score = 96.9 bits (106), Expect = 6e-17 Identities = 235/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 2240 TAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGCGTCTCCATCCTTGTCGA 2299 ||||| ||| || ||| | || || || ||| | || | ||||| || || || | Sbjct 21337 TAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAA 21278 Query 2300 TGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTG 2359 |||| || || || ||| || |||||||| | ||||| || ||||||| | ||| Sbjct 21277 TGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTG 21218 Query 2360 ACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTTGCAGTTGAATTTTCCTTCGA 2419 || | || | | | |||| || || | ||| |||| ||||| || || Sbjct 21217 TTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGA 21158 Query 2420 ACTGAATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGTTCTCTGCAAATTTTGA 2479 |||| | ||| | ||| | ||| || ||||| | | ||||||||||||||| | | | | Sbjct 21157 ACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCA 21098 Query 2480 TGAATTTTTTATTTGT--TGGAGTATCAGTATTTAATAATTGAGATAGTGCTTCTTCTTT 2537 || |||| |||||| | ||| | || | ||| | ||| || | | ||||| Sbjct 21097 TGTATTTGAGATTTGTACGGTAGT-TGAG-AATTATGAGATGATGAAGAACATAATCTTT 21040 Query 2538 ATTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGAATTTATT 2586 ||||| ||| |||||| |||||||||||||||||||| ||||||| Sbjct 21039 TGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATT 20991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8722420995200