Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009354.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq29604 114 2e-22 >seq29604 Length=41804 Score = 114 bits (126), Expect = 2e-22 Identities = 257/382 (67%), Gaps = 3/382 (1%) Strand=Plus/Minus Query 2215 CTGTCTGCTGTCCTCCTCTTGCAGATCTTCCGTCGATCTGAATCTCTCCCCATTCGAGGG 2274 ||||||||| ||| | ||| ||||||| ||| | |||| || ||| | || | | Sbjct 21355 CTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGT 21296 Query 2275 TGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGT 2334 ||||| || || || ||||| || || || || || |||||||| | ||||| | Sbjct 21295 AATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACAT 21236 Query 2335 TCGGATGGAAATGTGCTGATCTGTTTGGGGAGACCAAGTCGAAGAATCGCTGATTCTGGC 2394 | ||||||| | || ||| || || | | |||| || | ||||| || Sbjct 21235 TTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGC 21176 Query 2395 ACTTGTATTTCCCCTCGAACTGGATAAGCACGTGCAGATGAGGTTCCCCATTCTCGTGAA 2454 | ||||||| |||||||| ||| | ||||| ||| |||||||| || | ||| | Sbjct 21175 AACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTA 21116 Query 2455 GCTCTTTGCAGACTTTGATGTATTTTTTATTTGTTGGGGTTTGTAGGTTTTGGATTTGGG 2514 | ||| |||| ||| | |||||||| |||||| || | || || || || Sbjct 21115 GTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGAT 21056 Query 2515 AAAGTGCCTCTTCTTTAGTTAGAGAGCAT-TTGGGATAAGTGAGGAAATAGTTTTTGCAA 2573 ||| | | ||||| | ||||| ||| |||||| ||||||||||||| ||||||| | Sbjct 21055 GAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTA 20997 Query 2574 TAGATGTTAAAGC-GTTTAGAG 2594 | || |||| | ||| |||| Sbjct 20996 TTTATTCTAAACCTGTTGAGAG 20975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8693644679600