Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009451.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq29604 89.7 9e-15 >seq29604 Length=41804 Score = 89.7 bits (98), Expect = 9e-15 Identities = 179/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 2046 AACATAAACCTCTAATGGAGGTGCAAAAATCCTATCTAAATTTGATTTTAAATTATGATA 2105 |||||| || | || | ||||| | || || | | | ||||| | | ||||| |||||| Sbjct 21510 AACATATACTTGTATTTGAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATA 21451 Query 2106 CTGGAAAATAAAATCTCTTGGGAGTTTCTCCCTAATAACATTTAAAGCAGCTTCAGCAGA 2165 | | ||| ||| | ||||| |||||| | || | | ||| || | ||| Sbjct 21450 TTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTTCTAGA 21391 Query 2166 CCCAGAATTTAATGCCTCAGCTGCA-GCATCGTTAGCTGTCTGTTGACCTCCTCTAGCAG 2224 || |||||| | || || | || | ||||| | ||||||| | | ||| ||||| Sbjct 21390 CCTAGAATTAATCGCTTCGG-TGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAA 21332 Query 2225 ATCTTCCATCGATCTGAAATCGACCCCATTCGACGTAATCTCCGTCCTTCTCGATGTATC 2284 ||||||||||| | ||||| |||| | || ||||||||||| || || || |||||| Sbjct 21331 ATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATG 21272 Query 2285 TCTTGACATCAGAGCTGGATCTA 2307 || ||||| || | ||| || Sbjct 21271 ATTTAACATCGAAGGTTGATTTA 21249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8716026258400