Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_009547.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 225/336 (67%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 2236 GCAGATCGTCCGTCGATCTGAAACTCGCCCCACTCGAGGGTGTCTCCGTCCTTATCGATG 2295 ||| ||| ||| ||| | ||||| || ||| |||| | | ||||| || || || ||| Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2296 TAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGAC 2355 || || || || ||| || | |||||| | ||| | || ||||||| | || Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2356 CTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTC-GAA 2414 || | || | | | |||| || || | ||| ||||| || || |||||| ||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCA-ACATAATTTCCCGGTGAA 21157 Query 2415 CTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGATCTTGAT 2474 ||||| ||| | ||| | ||| || ||| | | ||| ||||||||||| | | || Sbjct 21156 CTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCAT 21097 Query 2475 GTATTTTTTATTTGTGGGGGTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCTCTTTGGT 2534 |||||| |||||| || ||| || || || || ||| | | ||||| | Sbjct 21096 GTATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGA 21037 Query 2535 GAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTT 2570 |||||| || ||| ||||||||||||||||||| Sbjct 21036 GAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTT 21001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8693644679600