Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_010435.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq29604 77.0 6e-11 >seq29604 Length=41804 Score = 77.0 bits (84), Expect = 6e-11 Identities = 243/367 (66%), Gaps = 16/367 (4%) Strand=Plus/Minus Query 2219 TAGCTGATCTTCCATCGACCTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCA 2278 |||| ||||||||||| || ||| | || | || | | ||||| || || || | Sbjct 21337 TAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAA 21278 Query 2279 TGTAGGTTTTGACATCGC---TTGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTG 2335 |||| | ||| |||||| |||| |||| | ||||| ||| ||||||| | Sbjct 21277 TGTATGATTTAACATCGAAGGTTGA---TTTAACATACTGAACATTTAGATGGAATTTGA 21221 Query 2336 CTGACCTGCT-TGGAGATGTGAGGTCGAAGAATCTATTGTTTCTGCACTGGAACTTCCCT 2394 || || | ||| | | | | | |||| || || | || |||| || ||||| Sbjct 21220 TTGTTCTATTATGGTGTTTT-ATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCG 21162 Query 2395 TCGAACTGAATGAGAACATGCAAGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATT 2454 |||||| | || | ||||| || || ||| | | || || |||||||| | | Sbjct 21161 GTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACT 21102 Query 2455 CTAATGAAtttt---tttGAAGTTGGGGTTTGGAGATTTAAGAATTGGGAAAGTGCCTCT 2511 || ||| |||| |||| | | ||| |||| ||| || || ||| | | Sbjct 21101 CTCATGTATTTGAGATTTGTACG-GTAGTT--GAGAATTATGAGATGATGAAGAACATAA 21045 Query 2512 TCTTTAGTGAGTGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGCATTTATTTTAAA 2570 ||||| | ||| || ||| |||||| |||||||||||||||||||| ||||||| |||| Sbjct 21044 TCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Query 2571 CCTATTG 2577 ||| ||| Sbjct 20985 CCTGTTG 20979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652078890400