Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_010439.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq29604 104 4e-19 >seq29604 Length=41804 Score = 104 bits (114), Expect = 4e-19 Identities = 263/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 2163 TTAATTGCTTTGGCGTAAGCATCATTGGCTGTTTGTTGACCCCCTCTAGCAGATCTTCCG 2222 ||||| |||| || ||| ||||| |||| || | | || ||||| ||||||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCA 21324 Query 2223 TCGACCTGAAACTCACCCCATTCGACGGTGTCTCCGTCTTTATCAATATAGGATTTGACG 2282 ||| ||||| |||||| | || ||| ||||| || || ||||| || ||||| || Sbjct 21323 TCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACA 21264 Query 2283 TCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGGGAT 2342 ||| || |||||||| | ||||| ||| ||||||| | || ||| | || | Sbjct 21263 TCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTGT 21204 Query 2343 ACCAAATCGAAGAATCGTTGATTCGTGCATCTGTATTTCCCCTCGAACTGGATGAGCACA 2402 | |||| || | |||||| ||||| | ||||||| |||||||| || | Sbjct 21203 TTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATG 21144 Query 2403 TGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATCTTGATGAATTTTTTATTT 2462 || | ||| || ||| | | ||| ||||||||||| | | ||| |||| |||| Sbjct 21143 TGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTT 21084 Query 2463 GT-TGGTGTTTCTAGGTTTTGTAATTGGGTAAGGGTTTCCTCTTTAGTAAGAGAGCAT-T 2520 || ||| || || || | || ||| | ||||| | ||||| ||| | Sbjct 21083 GTACGGTAGTT-GAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCT 21025 Query 2521 TGGGATATGTAAGAAAATAATTTTTGGCATTTATT 2555 ||||| | || || |||||||||||| ||||||| Sbjct 21024 TGGGA-AAGTGAGGAAATAATTTTTGCTATTTATT 20991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8597723627600