Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_011024.1 Length=2771 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 346/531 (65%), Gaps = 12/531 (2%) Strand=Plus/Minus Query 2076 AACATAAACTTCTAAAGGAGGACTAAAAATCCTATCTAAATTTGAACTTAAATTATGAAA 2135 |||||| |||| || |||| || || | | | ||||| || ||||| |||| | Sbjct 21510 AACATATACTTGTATTTGAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATA 21451 Query 2136 TTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTTACT 2195 || || ||| | |||||| | |||||||||| ||| ||| | | |||| Sbjct 21450 TTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTAT-TTGTAATAAT-GCATTTCTA 21393 Query 2196 G-CCT-GAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCT 2253 | ||| ||||| | ||||||| ||||| || | | |||| | ||| |||| Sbjct 21392 GACCTAGAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCA 21333 Query 2254 GATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAATTCTCCGTCTTTCTCCACGTAG 2313 |||| |||||| |||| ||| | || | || | | | ||||| || || || | ||| Sbjct 21332 AATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTAT 21273 Query 2314 GTCTTGACATCT---GTTGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGAC 2370 | || ||||| ||||| ||| | ||||| || ||||||| | || Sbjct 21272 GATTTAACATCGAAGGTTGAT---TTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2371 CTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTTTTACATTGGTATTTGCCTTCGAAT 2430 || || || | | | |||| |||| ||| || | || |||| || ||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2431 TGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAACTTTGATG 2490 |||| ||| | || | |||||||||||| || | ||| | ||||||||| ||| | ||| Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2491 TATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAG 2550 ||||| |||||| || | || || | | || ||| | | ||||| ||| Sbjct 21095 TATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAG 21036 Query 2551 AGATAACA-ATTGGGATATGTCAGGAAATAATTTTTGGCATATATTTTAAA 2600 ||| |||| |||||| | || ||||||||||||||| || |||| |||| Sbjct 21035 AGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8747788176000