Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_011096.1 Length=2794 Score E Sequences producing significant alignments: (Bits) Value seq29604 109 1e-20 >seq29604 Length=41804 Score = 109 bits (120), Expect = 1e-20 Identities = 267/402 (66%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 2218 GAGTTAATTGCTTTGGCGTAAGCGTCGTTTGCTGTCTG-TTGTCCCCCTCTTGCAGATCG 2276 || ||||| |||| || ||| || || ||||||| || | |||| | ||| ||| Sbjct 21386 GAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCT-TAGCAAATCT 21328 Query 2277 TCCATCGATCTGAAACTCTCCCCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTT 2336 ||||||| | ||||| || ||| | || | | ||||| || || || || || || || Sbjct 21327 TCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTT 21268 Query 2337 GACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGG 2396 || ||| || | |||||| | ||||| ||| ||||||| | || || | | Sbjct 21267 AACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATG 21208 Query 2397 GGATACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTGCCTTCGAACTGGAGAAG 2456 | | | | |||| || || | ||| ||||| |||| || |||||||||||| Sbjct 21207 GTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAG 21148 Query 2457 CACGTGGAGATGAGGCTCGCCATTTTCGTGTAGCTCTTTGCAGATTTTGATGTACTTCTT 2516 | ||| | ||| || || || || | |||||| ||| |||| | | | ||||| || Sbjct 21147 TATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAG 21088 Query 2517 ATTTGTTGGGGTGTCTAGACCTTGAAGTTGTTGGAGAGTTTCCTCTTTTGATAGAGAGCA 2576 |||||| || || ||| | || || || ||| | |||||||| ||||| || Sbjct 21087 ATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACA 21028 Query 2577 TTTAGGATATGTGAGAAAGAAATTCTTGGCACTTATTTTAAA 2618 | | || | ||||| || |||| ||| | ||||| |||| Sbjct 21027 TCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8821325869000