Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_012206.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq29604 102 1e-18 >seq29604 Length=41804 Score = 102 bits (112), Expect = 1e-18 Identities = 289/439 (66%), Gaps = 5/439 (1%) Strand=Plus/Minus Query 2231 TTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTGCAGATCTCCCA 2290 |||| |||| ||| ||| || || ||||||| | ||| | ||| |||| ||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCA 21324 Query 2291 TCGATCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTCGATGTAGGACTTGACG 2350 ||| | || || || ||| | || | |||||| || || || ||||| || || || Sbjct 21323 TCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACA 21264 Query 2351 TCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAC 2410 ||| || | |||||| | ||| | ||| ||||||| | || || | || Sbjct 21263 TCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTGT 21204 Query 2411 ACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTCGAACTGCAGAAGCACG 2470 | | |||| || || ||||| ||| |||| || |||||| ||||| | | Sbjct 21203 TTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATG 21144 Query 2471 TGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTTGATATATTTTTTATTC 2530 || | ||| || | || | | ||| ||||||||||| | | || ||||| ||| Sbjct 21143 TGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTT 21084 Query 2531 GTTGGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTCTTCTTTAGAAATAGAGCATTTT 2590 || || | || ||| || || | || | | ||||| || | ||| ||| || Sbjct 21083 GTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCTT 21024 Query 2591 GGGAAAGTGAGGAAGTAGTTTTTGGAATTTATTCTAAATTTCTTTGGAGGAGC-CATATG 2649 |||||||||||||| || |||||| |||||||||||| || | || |||| | ||| Sbjct 21023 GGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA--CCTGTTGA-GAGCTCTTAT- 20968 Query 2650 GTCAACTAGCACCAATTGA 2668 ||||| | |||||||||| Sbjct 20967 GTCAAATGTCACCAATTGA 20949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8789352959000