Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq29604 95.1 2e-16 >seq29604 Length=41804 Score = 95.1 bits (104), Expect = 2e-16 Identities = 238/355 (67%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 2236 GCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGA 2295 ||| ||||||||||| | ||||| || ||| | || | | ||||| || || || | Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2296 TAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGAC 2355 || || || || || || |||||||| | ||||| || ||||||| | || Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2356 CTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAAC 2415 || | || | | | |||| || || | ||| ||||| ||||||| |||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2416 TGGATGAGCACGTGAAGATGAGGTTCCCCATTCTCATGAAGTTCCCTGCAGACTCTTATG 2475 |||| || | ||| | ||| |||||||| || | || ||||| ||||| ||||| ||| Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2476 TATTT----TTTGTTTACTGGGGTTTGTAGGTTTTCTAATTGTGAGAGGGCTTCTTCTTT 2531 ||||| |||| ||| || ||| || | || ||| || | | ||||| Sbjct 21095 TATTTGAGATTTG--TAC-GGTAGTTGAGAATTATGAGATGATGA-AGAACATAATCTTT 21040 Query 2532 AGTTAGAGAGCAT-TTGGGATAAGTGAGAAAATAGTTTTTTGCATTTAATCTAAA 2585 | ||||| ||| |||||| ||||||| ||||| ||||| ||||| |||||| Sbjct 21039 TGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690447311200