Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07]
77,400 sequences; 512,990,763 total letters
Query= NC_012665.1
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
seq29604 104 4e-19
>seq29604
Length=41804
Score = 104 bits (114), Expect = 4e-19
Identities = 246/367 (67%), Gaps = 10/367 (3%)
Strand=Plus/Minus
Query 2215 CCCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCAAGGATGTCTCCGTCCTT 2274
|||| ||||| ||| ||| ||| | ||||| || ||| | || | | ||||| || ||
Sbjct 21341 CCCT-TAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATT 21283
Query 2275 GTCGATGTAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATATTTGGATGGAAATG 2334
|| ||||| || || || || || |||||||| | ||||| |||| ||||||| |
Sbjct 21282 TTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTT 21223
Query 2335 TGCTGACCTGTGTGGGGAGACCAGGTCGAAGAATCGCTTATTCTTGCACTGGTATTTCCC 2394
|| || | || | | |||| || | | ||| |||| |||||||
Sbjct 21222 GATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCC 21163
Query 2395 CTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGAAACTCTCTGCAGAT 2454
||| |||| || | ||| | ||| |||||||| || | ||| | |||||||| |
Sbjct 21162 GGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACAC 21103
Query 2455 CTTGATGTATTT----TTTGGATGTTGGGGTTTGTAGGTTTTGGAGTTGGGAAAGTGCTT 2510
| |||||||| |||| | | | | ||| || || ||| || ||| | |
Sbjct 21102 TCTCATGTATTTGAGATTTGTACGGTAG---TTG-AGAATTATGAGATGATGAAGAACAT 21047
Query 2511 CCTCCTTTGTAAGGGAGCATTTTGGGTAAGTGAGGAAATAATTTTTGGCATTTATTTTAA 2570
|| |||| || || ||| ||||| |||||||||||||||||||| ||||||| |||
Sbjct 21046 AATCTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAA 20987
Query 2571 A-CTGTT 2576
| |||||
Sbjct 20986 ACCTGTT 20980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8661670995600
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |