Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_013022.2 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq29604 95.1 2e-16 >seq29604 Length=41804 Score = 95.1 bits (104), Expect = 2e-16 Identities = 184/266 (69%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 2112 AATATCCTATCTAAATTGCTAACTAAATTATGATATT---GAAATATAAATTTTTCAGGG 2168 ||||| | | | |||||| | |||||| |||||||| ||| || || ||||| ||| Sbjct 21485 AATATTCGACCCAAATTGTAATCTAAATCATGATATTATAGAATTA-AACTTTTT--GGG 21429 Query 2169 AGTTTCTCCCTGATTATTTGTAACGCAGCTTCTTTAGAACCTGCGTTTAAT-GCCTCTGC 2227 |||||| | ||||||||||| || | | ||| |||| ||||| || || | Sbjct 21428 TCTTTCTCTTTTATTATTTGTAATAATGCATTTCTAG-ACCTAGAATTAATCGCTTCGGT 21370 Query 2228 GGCAGCGTCGTTAGCAGTCTGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTC 2287 | || || | | ||||||| ||| ||||| |||| || ||| | || || || Sbjct 21369 GTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATC 21310 Query 2288 ACCCCAGTCGAGGTAGTCTCCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTT 2347 |||| | || | ||| ||||| || || || |||||||| || ||||| ||| || || Sbjct 21309 ACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTT 21250 Query 2348 AGCTGCCTGGAAATTTGGATGGAATT 2373 | | ||| | |||| ||||||||| Sbjct 21249 AACATACTGAACATTTAGATGGAATT 21224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8811733996000