Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq29604 98.7 2e-17 >seq29604 Length=41804 Score = 98.7 bits (108), Expect = 2e-17 Identities = 174/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 2140 AAATTTGAAACTAAATTATGATATTGAAAAATATATTTTTCAGGGAGTTTCTCCCTTATT 2199 ||||| || |||||| |||||||| | ||| | ||| ||| |||||| ||||| Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2200 ATTTGTAACGCAGCTTCTTTAGAACCTGCGTTTAAT-GCCTCTGCGGCAGCGTCGTTAGC 2258 |||||||| || | | ||| |||| ||||| || || | | || || | | Sbjct 21413 ATTTGTAATAATGCATTTCTAG-ACCTAGAATTAATCGCTTCGGTGTATGCATCTACAAC 21355 Query 2259 AGTCTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAGGTA 2318 ||||||| | ||| ||||| |||| || ||| | || || |||||| | || | ||| Sbjct 21354 TGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTA 21295 Query 2319 GTCTCCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAAATT 2378 ||||| || || || |||||||| || ||||| ||| || ||| | ||| | ||| Sbjct 21294 ATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATT 21235 Query 2379 TGGATGGAATT 2389 | ||||||||| Sbjct 21234 TAGATGGAATT 21224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8862890652000