Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014645.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq29604 114 2e-22 >seq29604 Length=41804 Score = 114 bits (126), Expect = 2e-22 Identities = 267/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 2216 GAGTTAATTGCTCCGGCGTAAGCATCATTGGCTGTTTGTTGGCCTCCTCTTGCAGATCTT 2275 || ||||| ||| ||| ||| ||||| |||| || | ||| | ||| ||||| Sbjct 21386 GAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTT 21327 Query 2276 GCATCGATTTGAAATTCTCCCCATTCGAGGGTGTCGCCGTCCTTGTCGATGTAGGACTTG 2335 ||||| ||||||| || ||| | || | | || || || || || ||||| || || Sbjct 21326 CCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTA 21267 Query 2336 ACATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGTTAGGG 2395 |||||| || | |||||| | ||| | || ||||||| | || || ||| || Sbjct 21266 ACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGG 21207 Query 2396 GATATGAGGTCGAAGAATCGCTGATTCTGGCACTTGTACTTCCCTTCGAATTGCATAAGC 2455 | | | | |||| || | ||||| ||| | ||||| ||| || | ||| Sbjct 21206 TGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGT 21147 Query 2456 ACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTTAATATATTTTTTA 2515 | || | ||| ||||| || || | ||| ||||||||||| | | | || ||||| | Sbjct 21146 ATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGA 21087 Query 2516 TTGGTTGGGGTATTT---AATT-TGAGTATTTGTTCGAGTGCCTCTTCTTTGGATAGAGA 2571 || || || || || |||| |||| || | || | | ||||| || ||||| Sbjct 21086 TTTGTACGG-TAGTTGAGAATTATGAGA---TGATGAAGAACATAATCTTTTGAGAGAGA 21031 Query 2572 GCATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTAT 2610 ||| ||||||||||||||||||||||||| |||||| Sbjct 21030 ACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTAT 20992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8814931287000