Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014647.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq29604 109 1e-20 >seq29604 Length=41804 Score = 109 bits (120), Expect = 1e-20 Identities = 273/408 (67%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 2183 GAGTTAAGTGCTGCGGCGTAAGCGTCGTTTGCTGTCTG-TTGTCCCCCTCTTGCAGATCT 2241 || |||| ||| ||| ||| || || ||||||| || | |||| | ||| |||| Sbjct 21386 GAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCT-TAGCAAATCT 21328 Query 2242 TCCATCGATCTGAAATTCCCCCCACTCGA--GAATGTCCCCGTCCTTGGCGATATAGGAC 2299 ||||||| | ||||| || ||| |||| | ||| |||| || || | || || || Sbjct 21327 TCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCC--TCATTTTCAATGTATGAT 21270 Query 2300 TTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTAGTT 2359 || || ||| || | |||||| | ||| | || ||||||| | || ||| | Sbjct 21269 TTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTA 21210 Query 2360 GGGGATACGAGGTCGAAGAATCTCTGATTCTTGCACTGGTATTTGCCTTCGAACTGGAGG 2419 || | | | |||| || || ||||| |||| |||| || ||||||||| Sbjct 21209 TGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGA 21150 Query 2420 AGCACGTGAAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATTCTAATGTATTT- 2478 || | ||| | ||| |||||||| || | ||| || |||||||| | ||| |||||||| Sbjct 21149 AGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTG 21090 Query 2479 ---TTTGTTTACTGGGGTTTGTAGATTTTGTAATTGGGAAAGTGCTTCCTCTTTAGTAAG 2535 |||| ||| | ||| ||| || | || ||| | | ||||| | || Sbjct 21089 AGATTTG--TACGGTAGTT--GAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAG 21034 Query 2536 AGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTATTTTAAA 2583 ||| ||| | || |||||| ||||||||||||| ||||||| |||| Sbjct 21033 AGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8696842048000