Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_016575.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq29604 89.7 9e-15 >seq29604 Length=41804 Score = 89.7 bits (98), Expect = 9e-15 Identities = 313/476 (66%), Gaps = 12/476 (3%) Strand=Plus/Minus Query 2096 TGATATTGCAGAAAGAAGTTTTTCGGGTCTTTCTCTTTTATAACCTGCAATGCGGAATCT 2155 ||||||| |||| || |||| ||||||||||||||||| | || ||| | || | Sbjct 21455 TGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTT 21396 Query 2156 TTATCCGCTGCATTTAAT-GCTTCTGCATAAACATCTGCTAAACATTGTCCCTC-ACCTC 2213 || | || | ||||| ||||| | || ||||| | ||| | | | | | | | Sbjct 21395 CTAGAC-CTAGAATTAATCGCTTCGGTGTATGCATCTAC--AACTGTCTGCTTATATCCC 21339 Query 2214 TT-GCACTTCGTGGATCGACCTGGAATTGCCCATGGTCGATGAAATCGCCTCCCTTCTCG 2272 || ||| || | |||| || || | || | || | | |||| || | || || Sbjct 21338 TTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCA 21279 Query 2273 ATGTATGATTTGACATCTGACGAGCTCTTAGCTCCCTGAATGTTTGGATGGTAAGGTG-T 2331 ||||||||||| ||||| | | ||| | ||||| ||| ||||| || || | Sbjct 21278 ATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGG-AATTTGAT 21220 Query 2332 TGGCCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCACTGGTATTTCCCTTC 2391 || || | || || | | |||| || || ||||| ||||| ||||||| Sbjct 21219 TGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGT 21160 Query 2392 GAACTGTATGAGCACATGGAGATGAGGCTCCCCATCTTGGTGTAACTCTCTGCACACTCG 2451 |||||| | || | || | ||| || ||||| | | ||||| ||||||||||||| Sbjct 21159 GAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCT 21100 Query 2452 AATGAATTTAATATTTGTTGGTGTACGAAGGGAA--ATAAGTTTCTGCAGAGCTTCCTCT 2509 ||| |||| | |||||| | ||| | | ||| || || | || ||| | | ||| Sbjct 21099 CATGTATTTGAGATTTGTACG-GTA-GTTGAGAATTATGAGATGATGAAGAACATAATCT 21042 Query 2510 TTAGATATAGAACACTGAGGGTAAGTGAGGAAATAATTCTTGGCGTTTATCTTAAA 2565 || || | |||||| ||| |||||||||||||||| ||| ||||| |||| Sbjct 21041 TTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610513101200