Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_016999.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq29604 93.3 7e-16 >seq29604 Length=41804 Score = 93.3 bits (102), Expect = 7e-16 Identities = 255/379 (67%), Gaps = 20/379 (5%) Strand=Plus/Minus Query 2087 TATGTATCGTTAACTGTCTGTTGACCTCCTCGAGCAGATCGTCCGTCGATCTGAAAATCA 2146 |||| ||| ||||||||| | | ||| |||| ||| ||| ||| | ||||||||| Sbjct 21368 TATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCA 21309 Query 2147 CCCCATTCGACGTAATCTCCGTCCTTCTCAATATATGATTTGGCGTCGGAGGATGACTT- 2205 ||| | || ||||||||||| || || ||||| |||||||| | ||| ||| ||| || Sbjct 21308 CCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTA 21249 Query 2206 GCATGATTCGTATTTTCCATGACAAACATTTGAATG----ACTGGGATGTCGCAAGTCGA 2261 ||| | | ||| ||| |||||| || | | | ||| | | ||| Sbjct 21248 ACAT-ACTGAACATTTAGATG----GAATTTGATTGTTCTATTATGGTGTTTTATGCCGA 21194 Query 2262 AGAATCTGCAATTCGTGCATGTGAACTTACCTTCGAATTGCAGCAAAGCA--TGGAGATG 2319 | || || ||| ||||| || || || ||| || || ||| | || | ||| Sbjct 21193 AAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAG--AAGTATGTGCAAATG 21136 Query 2320 AGGCTCCCCATTTCCGTGTAATTCTCTGCATACACGGATATATTTCTTGTTTGTA-GGT- 2377 || ||||| || ||||| ||||||||| || | || ||||| |||||| ||| Sbjct 21135 TGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTA 21076 Query 2378 GTATCTAATGCTAGAAGTTGAGCAAGTGCCTCTTCTTTGGAGATAGAGCA-CTTGGGATA 2436 || ||| || || ||| ||| | | ||||| |||| ||| || ||||||| | Sbjct 21075 GTTGAGAAT--TATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA-A 21019 Query 2437 AGTAAGGAAATAATTTTTG 2455 ||| ||||||||||||||| Sbjct 21018 AGTGAGGAAATAATTTTTG 21000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8396289418400