Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq29604 127 3e-26 >seq29604 Length=41804 Score = 127 bits (140), Expect = 3e-26 Identities = 300/448 (67%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 2063 TTTCTCTTTTATTATTTGCATGGCTTCTTCCTTTGAAGA---AGCATTTAACGCCTCGGA 2119 |||||||||||||||||| | | | | ||| ||| || ||| | ||| |||| Sbjct 21426 TTTCTCTTTTATTATTTGTAA---TAATGCATTTCTAGACCTAGAATTAATCGCTTCGGT 21370 Query 2120 GGCTGCATCATTAACTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAATG 2179 | |||||| ||||||||||| | ||| ||||| ||||||| ||| |||||||| Sbjct 21369 GTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATC 21310 Query 2180 ACCCCATTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGGATGATTT 2239 |||| | || |||||||| || || || || ||||| || || ||||| ||| |||||| Sbjct 21309 ACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTT 21250 Query 2240 TGCACTCTGTATATTGGCATGGGAGACGGAAGAGGTGTTTGGATGTTTGAGGTCGAAGAA 2299 || ||| | ||| |||| | | | | || | ||||| | | |||| || Sbjct 21249 AACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAA 21190 Query 2300 TCTGCAATTCGTGCACTGGAACTTTCCTTCGAATTGAATGAGAGCATGCAGATGCGGTTC 2359 || ||| ||||| || || || ||| || | || |||| ||| ||||| Sbjct 21189 CCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTC 21130 Query 2360 CCCATTCTCGTGAAGTTCTCTGCAGATTCTGATATATTT----CTTGTTGACTGGTGTGT 2415 ||| || | ||| ||||||||||| | ||| || ||||| |||| || ||| || Sbjct 21129 CCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTTGT--AC-GGT-AGT 21074 Query 2416 CTAGGTTTTGAAGCTGTTCAATTGCACTCTCTTTCGCAATTGAGCATCGGGGATATGTGA 2475 || || || || | || || ||||| | | || |||| || | |||| Sbjct 21073 TGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGAAAGTGA 21014 Query 2476 GGAAATAATTTTTGGCGTTTATTTTAAA 2503 |||||||||||||| |||||| |||| Sbjct 21013 GGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8383499944800