Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021245.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq29604 82.4 1e-12 >seq29604 Length=41804 Score = 82.4 bits (90), Expect = 1e-12 Identities = 262/403 (65%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 2188 TTAAGCGCTTTGGCGTAAGCATC----ATTGGCTGATTGTTGCCCTCCTCTAGCACTTCT 2243 |||| ||||| || ||| ||||| | || ||| || | |||| ||||| ||| Sbjct 21383 TTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCT----TAGCAAATCT 21328 Query 2244 TCCATCGATCTGGAACTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTTGATATAGGACTT 2303 ||||||| | || || || ||| | || | ||||| || || | || || || || Sbjct 21327 TCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTT 21268 Query 2304 GACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTTG 2363 || ||| || | |||||| | ||||| ||| ||||||| | || || | || Sbjct 21267 AACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATG 21208 Query 2364 GGATACCAGGTCGAAGAATCTGTTATTCTTGCACTGGAACTTGCCCTCGAACTGGATGAG 2423 | | | | |||| || || | ||| |||| || || || |||||||| || Sbjct 21207 GTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAG 21148 Query 2424 CACGTGGAGATGAGGGTTCCCATTTTGGTGAAACTCTCTACAGATCTTGATATATTTTTT 2483 | ||| | ||| || | ||| || | ||| | ||||| || | | || ||||| Sbjct 21147 TATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAG 21088 Query 2484 ATTTGTTGGTGTAGTTAGGTTTTGT-AGTTGGGAAAGTGCTTCGTCTTTAGTAAGAGAGC 2542 |||||| | |||||| | || | || || ||| | | ||||| | ||||| | Sbjct 21087 ATTTGTACG-GTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAGAAC 21029 Query 2543 AATCTGGATAAGTGAGGAAAAAATTTTTGGCATTTATTCGAAA 2585 | ||| ||||||||||| |||||||| |||||||| ||| Sbjct 21028 ATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA 20986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658473627200