Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_023312.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq29604 82.4 1e-12 >seq29604 Length=41804 Score = 82.4 bits (90), Expect = 1e-12 Identities = 172/254 (68%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 2111 AAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATT 2170 ||||| | | ||||| |||||||| | ||| ||| ||||||| ||| || ||||| Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2171 ATTG---ATAAAGCCTCTTCAGCCGAACCT-GCATTTAGGGCCTCTGCTGCTGCATCATT 2226 ||| |||| || | | || |||| | ||| | || || | |||||| Sbjct 21413 ATTTGTAATAATGCATTTCTAG----ACCTAGAATTAATCGCTTCGGTGTATGCATCTAC 21358 Query 2227 AGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGAT 2286 | ||||||| | | ||| |||| ||||||||||| | ||||| | |||| | || | Sbjct 21357 AACTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTAC 21298 Query 2287 GTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAA 2346 |||||| || || || || ||||| || || |||||| || | || || | ||| | Sbjct 21297 GTAATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAAC 21238 Query 2347 GTTTGGGTGGAATT 2360 ||| | ||||||| Sbjct 21237 ATTTAGATGGAATT 21224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719223626800