Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_024009.1 Length=2772 Score E Sequences producing significant alignments: (Bits) Value seq29604 95.1 2e-16 >seq29604 Length=41804 Score = 95.1 bits (104), Expect = 2e-16 Identities = 192/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 2068 AACATAAACCTCCATTGGAGGTGCAAAAATCCTATCTAAATTATTTTTTAAATTATGATA 2127 |||||| || | ||| ||||| | || || | | | ||||| | | ||||| |||||| Sbjct 21510 AACATATACTTGTATTTGAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATA 21451 Query 2128 TTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCCAGAGCAGCATCAGCGGA 2187 || | ||| ||| ||| ||| |||||| | |||||| | |||| || Sbjct 21450 TTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTTCTAGA 21391 Query 2188 CCCTGAATTCAGAGCTTCTGCAGCAGCATCATTAACTCTCTGTTGACCTCCTCTAGCAGA 2247 || ||||| | ||||| | ||||| |||| |||| | | ||| ||||| | Sbjct 21390 CCTAGAATTAATCGCTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAA 21331 Query 2248 TCTTCCATCGACCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGA 2307 |||||||||| ||||| |||||| | || | |||||| || || || || ||||| || Sbjct 21330 TCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGA 21271 Query 2308 CTTGACATCGGATGAGGACTTAGCTCCCTGGAAATTTGGGTGGAA 2352 || |||||| | | || ||| | ||| | |||| | ||||| Sbjct 21270 TTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAA 21226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8750985467000