Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025681.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq29604 86.0 1e-13 >seq29604 Length=41804 Score = 86.0 bits (94), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 2392 CGAAGAATCTTTGATTCGTGCACTGGTAATTCCCCTCGAACTGGAGAAGCACATGGAGAT 2451 |||| || |||||||| ||||| | ||||| |||||||||||| | || | || Sbjct 21196 CGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAAT 21137 Query 2452 GAGGTTGCCCATCTTCATGCAGTTCTCTGCATATCTTAATATATTTTTTATTTGTAGGG- 2510 | |||| ||| | | || ||||||||||| | | || ||||| ||||||| || Sbjct 21136 GTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGT 21077 Query 2511 -GTTTGGAGTTGAAGAAGCTGCTGAAGAGTTTCTTCTTTGGATAGAGAACAT-TGGGGAT 2568 ||| || || | || || |||||| | ||||| || ||||||||| | |||| Sbjct 21076 AGTTGAGAATT--ATGAGATGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA- 21020 Query 2569 AAGTGAGAAAATAGTTTTT 2587 ||||||| ||||| ||||| Sbjct 21019 AAGTGAGGAAATAATTTTT 21001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8782958377000