Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025964.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq29604 84.2 4e-13 >seq29604 Length=41804 Score = 84.2 bits (92), Expect = 4e-13 Identities = 193/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 2067 AACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATA 2126 |||||| || | || ||||| || || | | | ||||| | | ||||| |||||| Sbjct 21510 AACATATACTTGTATTTGAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATA 21451 Query 2127 TTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGA 2186 || | ||| ||| ||| ||| ||| || | |||||| ||| ||| | ||| Sbjct 21450 TTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTTCTAGA 21391 Query 2187 ACCGGCATTTAACGCCTCTGCTGCAA-CATCATTAGCTGTCTGTTGACCTCCTCGAGCAG 2245 | | ||| | ||| || | || | |||| | ||||||| | | ||| |||| Sbjct 21390 CCTAGAATTAATCGCTTCGG-TGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAA 21332 Query 2246 ATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGG 2305 ||||||||||| | ||||| |||||| | || | |||||| || || || || ||||| | Sbjct 21331 ATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATG 21272 Query 2306 ACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATT 2353 | || ||||| || | || ||| | ||| | ||| | ||||||| Sbjct 21271 ATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATT 21224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690447311200