Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026763.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq29604 77.0 6e-11 >seq29604 Length=41804 Score = 77.0 bits (84), Expect = 6e-11 Identities = 221/340 (65%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 2240 ATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGAGTGTCTCCGTCCTTGTTGATGTAGG 2299 ||| ||| ||| | || || || ||| | || | ||||| || || | ||||| | Sbjct 21331 ATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATG 21272 Query 2300 ACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGT 2359 | || || ||| || | |||||| | ||||| || ||||||| | || || | Sbjct 21271 ATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTAT 21212 Query 2360 TTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGTA 2419 | || | | | |||| || || | ||| ||||| ||||||| |||||| | Sbjct 21211 TATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGA 21152 Query 2420 TAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGCTCTCGACAGATTTTGATATATT 2479 ||| | ||| | ||| || | ||| || | || || |||| || | | | || |||| Sbjct 21151 GAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTATT 21092 Query 2480 TTTTATTTGTGGGGGTATTGAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGAAAGAG 2539 | |||||| || ||||| || | || ||| | | |||||||| |||| Sbjct 21091 TGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCTTTTGAGAGAG 21032 Query 2540 AGCATTCTGGATAAGTGAGGAAATAATTTTTGGCTTTTAT 2579 | ||| ||| |||||||||||||||||||| ||||| Sbjct 21031 AACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTAT 20992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8642486785200