Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031306.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq29604 84.2 4e-13 >seq29604 Length=41804 Score = 84.2 bits (92), Expect = 4e-13 Identities = 320/498 (64%), Gaps = 16/498 (3%) Strand=Plus/Minus Query 2094 AAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGAGCCTTCTCCTTTAAT 2153 ||||| ||| ||||| |||| | | || | ||| ||| || | ||||| |||| | Sbjct 21473 AAATTGTAATCTAAATCATGATATTATAGAATTAAACTTTTTGGGTCTTTCTCTTTTATT 21414 Query 2154 ATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCA 2213 || | | || | | |||| ||||| || || |||| ||||| || | Sbjct 21413 ATTTGTAATAATGCATTTCTAGACCTAGAATTAATCGCTTCGGTGTATGCATCTACAACT 21354 Query 2214 GACTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAATTCCATGATCAAGGATG 2273 | ||| | ||| |||| ||||||||||| ||| ||| || | || | | Sbjct 21353 GTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAA 21294 Query 2274 TCTCCGTCTTTCTCCATGTAGGTTTTGACATCGC---TTGAGCTTTTAGCTCCCTGAATG 2330 ||||| || || || ||||| | ||| |||||| |||| |||| | ||||| Sbjct 21293 TCTCCCTCATTTTCAATGTATGATTTAACATCGAAGGTTGA---TTTAACATACTGAACA 21237 Query 2331 TTTGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGTCGAAGAATCTATTGTTTCTG 2390 ||| ||||||| | || || | || | | | | |||| || || | || || Sbjct 21236 TTTAGATGGAATTTGATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTG 21177 Query 2391 CACTGGAACTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCATGA 2450 || || ||||| |||||||| || | ||||| || || ||| | | || Sbjct 21176 CAACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGT 21117 Query 2451 AGCTCTCTGCAGATTCTAATGAATTT----TTTGGAAGTTGGGGTTTGGAGATTTAAGAA 2506 || |||||||| | ||| ||| |||| |||| | | | | | |||| ||| || Sbjct 21116 AGTTCTCTGCACACTCTCATGTATTTGAGATTTGTACGGTAG----TTGAGAATTATGAG 21061 Query 2507 TTGGGAAAGTGCCTCTTCTTTAGTGAGGGAGCA-CTTGGGATAAGTGAGGAAATAATTTT 2565 || ||| | | ||||| | ||| || || ||||||| |||||||||||||||||| Sbjct 21060 ATGATGAAGAACATAATCTTTTGAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTT 21002 Query 2566 TGGCATTTATTTTAAACC 2583 || ||||||| |||||| Sbjct 21001 TGCTATTTATTCTAAACC 20984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8680855206000