Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_032118.1 Length=2791 Score E Sequences producing significant alignments: (Bits) Value seq29604 96.9 6e-17 >seq29604 Length=41804 Score = 96.9 bits (106), Expect = 6e-17 Identities = 269/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 2144 GAGGAGCGAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACAAAATCTT 2203 |||| |||| || | | | ||||| || ||||| |||| ||| || || ||| || Sbjct 21493 GAGGTACGAATATTCGACCCAAATTGTAATCTAAATCATGATATTATAGAATTAAACTTT 21434 Query 2204 TAGGAGCCTTCTCCTTTAATATATCGAGG---GCCTGTGACTTAGACCCTGAATTGAGTG 2260 | || | ||||| |||| ||| | | || | | |||||| ||||| | | Sbjct 21433 TTGGGTCTTTCTCTTTTATTATTTGTAATAATGCATTTC---TAGACCTAGAATTAATCG 21377 Query 2261 CCTCGGCATATGCGTCGTTGGCATTCTGGCAACCTCCTCTAGCAGATCGTCCATCGATCT 2320 | |||| ||||| || | |||| | ||| ||||| ||| ||||||| | | Sbjct 21376 CTTCGGTGTATGCATCTACAACTGTCTGCTTATATCCCTTAGCAAATCTTCCATCGTTTT 21317 Query 2321 GGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAGGATTTAACATCGGAGC 2380 | ||| | || | || | ||||| || ||||| ||||| |||||||||||| || Sbjct 21316 GAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATGTATGATTTAACATCGAAGG 21257 Query 2381 TAGACTTAGCTCCCTGGATGTTAGGATGGAATTGGGTTGAGCGATTA-GGTGAGTTGAGG 2439 | || ||| | ||| | || ||||||||| | ||| | |||| |||| || | | Sbjct 21256 TTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTTCTATTATGGTG-TTTTATG 21198 Query 2440 TCGAAGAAACGGTTG-TTTCTGCACTTGAATTTTCCTTCGAATTGGATGAGCACGTGTAG 2498 |||| |||| ||| || |||| ||||| || ||| |||| || | ||| | Sbjct 21197 CCGAA-AAACCTTTGATTGGTGCAACATAATTTCCCGGTGAACTGGAGAAGTATGTGCAA 21139 Query 2499 ATGAGGTTCCCCATTTTCATGTAATTCTCTGCAAATTCTGATGAAT 2544 ||| |||||||| || | |||| ||||||||| | ||| ||| || Sbjct 21138 ATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATGTAT 21093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8811733996000