Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_033554.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq29604 91.5 3e-15 >seq29604 Length=41804 Score = 91.5 bits (100), Expect = 3e-15 Identities = 228/339 (67%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 2222 GCAGATCGTCCGTCGATCTGAAACTCCCCCCATTCGAGAGTGTCTCCGTCCTTGTCGATG 2281 ||| ||| ||| ||| | ||||| || ||| | || | ||||| || || || ||| Sbjct 21335 GCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTTTCAATG 21276 Query 2282 TAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGAC 2341 || || || || ||| || | |||||| | ||| | ||| ||||||| | || Sbjct 21275 TATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTGATTGTT 21216 Query 2342 CTATTTGGGGATACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAAC 2401 ||||| || | | | |||| || | ||||| ||| ||||||| |||| Sbjct 21215 CTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCGGTGAAC 21156 Query 2402 TGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGGAGTTCTCGGCAGATTTTAATA 2461 |||| || | ||||| ||| |||||||| || | || ||||||| ||| | | | || Sbjct 21155 TGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCTCATG 21096 Query 2462 TATTTTTGGGAAGT-TGGGGT--TTGAAGATTCTGGATTTGGGAAAGTGCTTCTTCTTTA 2518 ||||| | || | | ||| |||| ||| || | || ||| | | ||||| Sbjct 21095 TATTT--GAGATTTGTACGGTAGTTGAGAATTATG-AGATGATGAAGAACATAATCTTTT 21039 Query 2519 GTGAGAGAACA-CTTGGGATAAGTGAGGAAATAGTTTTT 2556 | ||||||||| ||||||| ||||||||||||| ||||| Sbjct 21038 GAGAGAGAACATCTTGGGA-AAGTGAGGAAATAATTTTT 21001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645684153600