Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_033779.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq29604 109 1e-20 >seq29604 Length=41804 Score = 109 bits (120), Expect = 1e-20 Identities = 264/396 (67%), Gaps = 4/396 (1%) Strand=Plus/Minus Query 2240 CCCTT-GCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGTGTATCGCCGTCCTTG 2298 ||||| ||| ||| ||| ||| | || || || ||| | || | ||| || || || Sbjct 21341 CCCTTAGCAAATCTTCCATCGTTTTGAAAATCACCCTACTCTACGTAATCTCCCTCATTT 21282 Query 2299 TCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2358 || ||||| || || || ||| || | |||||| | ||||| || ||||||| | Sbjct 21281 TCAATGTATGATTTAACATCGAAGGTTGATTTAACATACTGAACATTTAGATGGAATTTG 21222 Query 2359 GCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTCTGATTTTGGCAGTTGAATTTTCCT 2418 || || | || | | | |||| || || ||||| ||| ||||| || Sbjct 21221 ATTGTTCTATTATGGTGTTTTATGCCGAAAAACCTTTGATTGGTGCAACATAATTTCCCG 21162 Query 2419 TCGAACTGCAGAAGCACATGTAAATGAGGTTCGCCATCTTCGTGCAACTCTCTGCAGATT 2478 |||||| ||||| | || ||||| ||||| || | | ||| | |||||||| | | Sbjct 21161 GTGAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACT 21102 Query 2479 TTAATGTATTTTTTATTTGTTGGGGTTTGGAGTTTAAGTAGTTGTTCGAGGGCTTCGTCT 2538 | |||||||| |||||| || | ||| | | || || | || | | ||| Sbjct 21101 CTCATGTATTTGAGATTTGTACGGTAGTTGAGAATTATGAGATGATGAAGAACATAATCT 21042 Query 2539 TTGGTTAGAGAACATTTTGGGAAAGTAAGGAAATAATTTTTGGAATTAACTCTAAAACGC 2598 || | ||||||||| |||||||||| ||||||||||||||| ||| | |||||| | Sbjct 21041 TTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTATTCTAAA--CC 20984 Query 2599 TTTGGAGGAGCCATTTGGTCAACTAGCACCGATTGA 2634 | | || |||| || ||||| | |||| ||||| Sbjct 20983 TGTTGA-GAGCTCTTATGTCAAATGTCACCAATTGA 20949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8789352959000